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Hello world!

I enjoy involving in analytical procession all the time.

Contact Details

Phone:

+886 928 547 741

Email:

yin.cheng.23@gmail.com

Send me a message

Profile

"In the fields of observation, chance favours only the prepared mind."

Louis Pasteur.

I ever consider myself gauche to be a programmer. I am impatient with waiting several hours for handling pipette. Because of it, I divert my attention to data analyses. In this way, I could get the analytical result and modified the procession in time. I am curious to view in hundreds of thousands of bacteria maintaining ecological system from the complex interaction. I wish I could identify significant ecological relationships in compositional data.

Education

M.S. in Institute of Tropical Plant Sciences and Microbiology, 2018-2020

National Cheng Kung University. GPA 3.99/4.3

B.S in Department of BioAgricultural Science, 2013-2017

National Chiayi University. GPA 3.13

Work Experience

Research assistant @Dr. Chen-Ching Lin’s laboratory
National Yang Ming Chiao Tung University, 2022-Present.

Project : Feature engineering in sparse data.

Research assistant @Molecular Medicine Research Center
Chang Gung University, 2020-2022.

Project 1 : Global genome diversity in Mycoplasma pneumoniae.
  • Identify the evidence of evolved adaptation in genome.
  • Use Machine learning approaches to identify genetic signatures of antibiotic resistance.
Project 2 : Oral microbiota analysis.
  • Find the bacterial indicator of Oral squamous cell carcinoma (OSCC).
  • Use topology of inferred network to predict the stages of cancer.
  • Integrated microbiota and metabolite in Mycoplasma pneumoniae infaction.

Graduate Student Researcher @Dr. Chao-Li Huang’s laboratory
NCKU, 2019-2020.

Project 1 : Establishing a metagenomics-assisted approach for the isolation of
     sulfur-oxidizing bacteria (Thesis)
  • Use 16S rRNA amplicon data to predict digestion pattern for bacterial identification.
Project 2 : Fungal community succession through tea fermentation process.
  • Use the Markov chain clustering to explain the different strength of association within
     fungal community between black tea and green tea process based on ITS amplicon data.
  • Merge the ITS1, ITS2 and LSU amplicon data from NCBI taxonomy database.

Skills

Experiment: Bacteria culture, Plant tissue culture, Cloning, Western blot
       and Confocal microscopy.
Programming: R, Python, shell and a little bit of C++.
Languages: Mandarin Chinese, Taiwanese and English.

Award

Oral presentation aware, Multiomics and precision medicine joint conference, 2019.

Publication

Hsieh, Y. C., Wu, J. W., Chen, Y. Y., Quyen, T. L. T., Liao, W. C., Li, S. W., Chen, Y. C. & Pan, Y. J. (2021).
An Outbreak of tet (X6)-Carrying Tigecycline-Resistant Acinetobacter baumannii Isolates with a New Capsular Type at a Hospital in Taiwan. Antibiotics, 10(10), 1239.

Hsieh, Y. C., Li, S. W., Chen, Y. Y., Kuo, C. C., Chen, Y. C., Chang, I. Y. F., ... & Liao, W. C. (2022).
Global Genome Diversity and Recombination in Mycoplasma pneumoniae. Emerging infectious diseases, 28(1), 111.